Package: Familias 2.6.4
Familias: Probabilities for Pedigrees Given DNA Data
An interface to the core 'Familias' functions which are programmed in C++. The implementation is described in Egeland, Mostad and Olaisen (1997) <doi:10.1016/S1355-0306(97)72202-0> and Simonsson and Mostad (2016) <doi:10.1016/j.fsigen.2016.04.005>.
Authors:
Familias_2.6.4.tar.gz
Familias_2.6.4.zip(r-4.7)Familias_2.6.4.zip(r-4.6)Familias_2.6.4.zip(r-4.5)
Familias_2.6.4.tgz(r-4.6-x86_64)Familias_2.6.4.tgz(r-4.6-arm64)Familias_2.6.4.tgz(r-4.5-x86_64)Familias_2.6.4.tgz(r-4.5-arm64)
Familias_2.6.4.tar.gz(r-4.7-arm64)Familias_2.6.4.tar.gz(r-4.7-x86_64)Familias_2.6.4.tar.gz(r-4.6-arm64)Familias_2.6.4.tar.gz(r-4.6-x86_64)
Familias_2.6.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
Familias/json (API)
NEWS
| # Install 'Familias' in R: |
| install.packages('Familias', repos = c('https://thoree.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/thoree/familias/issues
- NorwegianFrequencies - A list of markers with allele names and frequencies
Last updated from:31d559dc3f. Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 120 | ||
| linux-devel-x86_64 | OK | 117 | ||
| source / vignettes | OK | 178 | ||
| linux-release-arm64 | OK | 136 | ||
| linux-release-x86_64 | OK | 131 | ||
| macos-release-arm64 | OK | 152 | ||
| macos-release-x86_64 | OK | 227 | ||
| macos-oldrel-arm64 | OK | 190 | ||
| macos-oldrel-x86_64 | OK | 445 | ||
| windows-devel | OK | 168 | ||
| windows-release | OK | 131 | ||
| windows-oldrel | OK | 108 | ||
| wasm-release | OK | 136 |
Exports:FamiliasLocusFamiliasPedigreeFamiliasPosteriorFamiliasPrior
Dependencies:codetoolsdigestevaluatefuturefuture.applyglobalshighrkinship2knitrlatticelistenvMatrixnumDerivparallellyquadprogRcppRcppArmadilloRsolnptruncnormxfunyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Familias: Inferring paternity and identification based on DNA data | Familias-package Familias |
| Creates an object with information on a locus, including its mutation matrices | FamiliasLocus |
| Creates an object storing a pedigree | FamiliasPedigree |
| Calculates posterior probabilities and likelihoods for pedigrees | FamiliasPosterior |
| Calculates a prior distribution for a list of pedigrees | FamiliasPrior |
| A list of markers with allele names and frequencies | NorwegianFrequencies |
| Plotting function for FamiliasPedigree objects | plot.FamiliasPedigree |
