Package: Familias 2.6.1
Familias: Probabilities for Pedigrees Given DNA Data
An interface to the core 'Familias' functions which are programmed in C++. The implementation is described in Egeland, Mostad and Olaisen (1997) <doi:10.1016/S1355-0306(97)72202-0> and Simonsson and Mostad (2016) <doi:10.1016/j.fsigen.2016.04.005>.
Authors:
Familias_2.6.1.tar.gz
Familias_2.6.1.zip(r-4.5)Familias_2.6.1.zip(r-4.4)Familias_2.6.1.zip(r-4.3)
Familias_2.6.1.tgz(r-4.4-x86_64)Familias_2.6.1.tgz(r-4.4-arm64)Familias_2.6.1.tgz(r-4.3-x86_64)Familias_2.6.1.tgz(r-4.3-arm64)
Familias_2.6.1.tar.gz(r-4.5-noble)Familias_2.6.1.tar.gz(r-4.4-noble)
Familias_2.6.1.tgz(r-4.4-emscripten)Familias_2.6.1.tgz(r-4.3-emscripten)
Familias.pdf |Familias.html✨
Familias/json (API)
# Install 'Familias' in R: |
install.packages('Familias', repos = c('https://thoree.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/thoree/familias/issues
- NorwegianFrequencies - A list of markers with allele names and frequencies
Last updated 11 months agofrom:70af813522. Checks:OK: 9. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 05 2024 |
R-4.5-win-x86_64 | OK | Nov 05 2024 |
R-4.5-linux-x86_64 | OK | Nov 05 2024 |
R-4.4-win-x86_64 | OK | Nov 05 2024 |
R-4.4-mac-x86_64 | OK | Nov 05 2024 |
R-4.4-mac-aarch64 | OK | Nov 05 2024 |
R-4.3-win-x86_64 | OK | Nov 05 2024 |
R-4.3-mac-x86_64 | OK | Nov 05 2024 |
R-4.3-mac-aarch64 | OK | Nov 05 2024 |
Exports:FamiliasLocusFamiliasPedigreeFamiliasPosteriorFamiliasPrior
Dependencies:evaluatehighrkinship2knitrlatticeMatrixquadprogRsolnptruncnormxfunyaml
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Familias: Inferring paternity and identification based on DNA data | Familias-package Familias |
Creates an object with information on a locus, including its mutation matrices | FamiliasLocus |
Creates an object storing a pedigree | FamiliasPedigree |
Calculates posterior probabilities and likelihoods for pedigrees | FamiliasPosterior |
Calculates a prior distribution for a list of pedigrees | FamiliasPrior |
A list of markers with allele names and frequencies | NorwegianFrequencies |
Plotting function for FamiliasPedigree objects | plot.FamiliasPedigree |